Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs12423201 | chr12:9432280 | T/C | 0.000203 | 480 | 15.33 | 17.7 | 16.82 | KM Plot |
| THCA | rs12424011 | chr12:58108519 | C/T | 0.000161 | 482 | 14.92 | 17.88 | 16.8 | KM Plot |
| THCA | rs12425282 | chr12:15051689 | T/C | 6.09E-5 | 473 | 17.03 | 14.8 | 12.63 | KM Plot |
| THCA | rs1242724 | chr14:23187710 | A/G | 0.00019 | 468 | 21.9 | 15.9 | 15.17 | KM Plot |
| THCA | rs12431836 | chr14:24824353 | G/A | 0.000209 | 485 | 16.07 | 15 | 16.2 | KM Plot |
| THCA | rs1244414 | chr10:7836104 | C/T | 3.52E-6 | 485 | 15.7 | 16.48 | 18.12 | KM Plot |
| THCA | rs1244415 | chr10:7836523 | T/A | 0.00031 | 488 | 15.15 | 15.9 | 16.67 | KM Plot |
| THCA | rs1244416 | chr10:7837189 | A/T | 0.000303 | 490 | 16.67 | 16.25 | 14.93 | KM Plot |
| THCA | rs1244418 | chr10:7838208 | A/G | 0.00022 | 483 | 15.57 | 15.9 | 16.28 | KM Plot |
| THCA | rs1244420 | chr10:7838783 | G/A | 7.86E-5 | 480 | 16.02 | 16.05 | 16.28 | KM Plot |
| THCA | rs1244423 | chr10:7839912 | C/T | 9.6E-5 | 483 | 15.17 | 16.2 | 16.67 | KM Plot |
| THCA | rs1244424 | chr10:7840594 | T/C | 9.6E-5 | 482 | 15.17 | 16.25 | 16.67 | KM Plot |
| THCA | rs1244425 | chr10:7841582 | G/T | 7.86E-5 | 480 | 16.02 | 16.05 | 16.28 | KM Plot |
| THCA | rs1244426 | chr10:7842389 | A/T | 7.86E-5 | 480 | 16.02 | 16.05 | 16.28 | KM Plot |
| THCA | rs1244428 | chr10:7842558 | C/T | 7.86E-5 | 480 | 16.02 | 16.05 | 16.28 | KM Plot |